Bcftools Introduction Brief description of subcommands Usage Links
Protocol for unbiased, consolidated variant calling from whole exome sequencing data - ScienceDirect
bcftools view | bcftools tutorial on how to count the number of snps and indels in a vcf file - YouTube
vcf_filter.py: VCF Filter Function — PPP 0.1.13 documentation
The evaluation of Bcftools mpileup and GATK HaplotypeCaller for variant calling in non-human species | Scientific Reports
How to filter with formated INFO fields? · Issue #1340 · samtools/bcftools · GitHub
Filtering of VCF Files
CallSNPs.py - wiki
No unexpected CRISPR-Cas9 off-target activity revealed by trio sequencing of gene-edited mice | PLOS Genetics
BCFtools filter - Issue with DP and basic question · Issue #1209 · samtools/ bcftools · GitHub
Filtering of VCF Files
Filtering of VCF Files
A simple SNP calling pipeline
Variant Calling with BCFTOOLS | Galaxy Tutorial - YouTube
Command Line - Andersen Lab Dry Guide
bcftools view maf filter · Issue #357 · samtools/bcftools · GitHub
Variant Calling using BCFtools
7. Variant calling — Genomics Tutorial 2020.2.0 documentation
bcftools filter -e 'GT="het"' recognize GT 2/2 as heterozygous · Issue #1268 · samtools/bcftools · GitHub
Variant calling using SAMtools
Cells | Free Full-Text | A Next Generation Sequencing-Based Protocol for Screening of Variants of Concern in Autism Spectrum Disorder
Mapping Summary and Extension
教程】如何使用BCFtools提取全基因组数据到芯片模拟数据？ - 知乎
